Class OverlapDnaSeq

java.lang.Object
org.snpeff.overlap.Overlap<DnaSequence>
org.snpeff.overlap.OverlapDnaSeq
public class OverlapDnaSeq extends Overlap<DnaSequence>

  • Field Details

    • debug

      public static boolean debug

  • Constructor Details

    • OverlapDnaSeq

      public OverlapDnaSeq()

  • Method Details

    • getMinOverlap

      public int getMinOverlap()

    • overlap

      public int overlap(DnaSequence seq1, DnaSequence seq2)
      Description copied from class: Overlap
      Calculate the best overlap between two sequences
      Specified by:
      overlap in class Overlap<DnaSequence>
      Parameters:
      seq1 -
      Returns:

    • setMinOverlap

      public void setMinOverlap(int minOverlap)